To read a particular line (eg 10-th line) from a text file and split by delimiter into an array
Array=(`sed -n "10{p;q;}" file.txt`)
A weblog sharing great ideas, theory, and implementations in data, sciences, and beyond.
Tuesday, October 27, 2015
Friday, October 9, 2015
Determine Whether Two Regions Overlap
Say we have two genomic regions (x1,x2) and (y1,y2) from the same chromosome. The simplest way to check whether the two regions overlap is perhaps testing:
Reference:
http://stackoverflow.com/questions/3269434/whats-the-most-efficient-way-to-test-two-integer-ranges-for-overlap
x1 <= y2 && y1 <= x2
assuming x1 <= x2 and y1 <= y2.Reference:
http://stackoverflow.com/questions/3269434/whats-the-most-efficient-way-to-test-two-integer-ranges-for-overlap
How to choose between AUC PR and AUC ROC?
An excellent discussion on the topic or PR vs ROC:
https://www.kaggle.com/forums/f/15/kaggle-forum/t/7517/precision-recall-auc-vs-roc-auc-for-class-imbalance-problems/41179
https://www.kaggle.com/forums/f/15/kaggle-forum/t/7517/precision-recall-auc-vs-roc-auc-for-class-imbalance-problems/41179
Tuesday, October 6, 2015
R: calling C from FORTRAN and vice versa
http://www.hep.by/gnu/r-patched/r-exts/R-exts_136.html
http://users.stat.umn.edu/~geyer/rc/
http://users.stat.umn.edu/~geyer/rc/
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